I'm using my NUC D54250WYK2 exclusively for running XBMC and I do this using a special Linux build called XBMCbuntu.
I tried connecting to the NUC via SSH and ran the commands mentioned in this thread but in my case I still was not able to use my Logitech Harmony 900 remote, nothing happened when I pressed any of the keys I programmed in the Logitech Harmony software.
Anyone else in here also running XBMCbuntu who managed to fix this issue?